Diversity and relationships of Crocus sativus and its relatives analysed by IRAPs

Saffron Crocus: molecular work in Leicester

Saffron Crocus: molecular work in Leicester

315. Alsayied N, Fernández JA, Schwarzacher T, Heslop-Harrison JS. 2015. Diversity and relationships of Crocus sativus and its relatives analysed by Inter Retroelement Amplified Polymorphism (IRAP). Annals of Botany 116(3): 359-368. doi:10.1093/aob/mcv103

Crocus IRAP Diversity Nouf AlSayied Ann Bot Author VersionoufAnnBotAuthorVersion

Background and Aims: Saffron (Crocus sativus L.) is a sterile triploid (2n=3x=24) cultivated species, of unknown origin from other diploid and polyploid species in the genus Crocus (Iridaceae). Species in the genus have high morphological diversity, with no clear phylogenetic patterns below the level of section Crocus, series Crocus. Using DNA markers, we aimed to examine diversity and relationships within and between Crocus series Crocus species.

Methods: We used a total of 11 Inter-Retroelement Amplified Polymorphisms (IRAPs) primers in 63 different combinations with 35 single-plant accessions of C. sativus and related Crocus species.

Key Results: A total of 4521 distinct polymorphic bands from 100bp to ~4kb were amplified; no fragment specific to all accessions of a single species was amplified. The polymorphic information content (PIC) values varied from ~0.37 to ~0.05 (average 0.17±0.1) and the major allele frequency averaged 0.87. High levels of polymorphism were identified between accessions of the six Crocus series Crocus species related to C. sativus, with further variation between the species. In contrast, no polymorphisms were seen among 17 C. sativus accessions obtained from across the world from Kashmir through Iran to Spain.

Conclusion: In contrast to the intraspecific variability seen in other Crocus species, C. sativus has minimal genetic variation, and we conclude that the triploid hybrid species has most likely arisen only once. Our data show that saffron is an allotriploid species, with the IRAP analysis indicating that the most likely ancestors are 30 C. cartwrightianus and C. pallasii subsp. pallasii (or close relatives). The results may facilitate resynthesizing saffron with improved characteristics and show the need for conservation and collection of wild Crocus.

Keywords: Crocus, Saffron, IRAP, Retrotransposons, Markers, Crops, Polyploidy, spices, selection, crops, triploid, domestication.

Crocus IRAP Diversity Nouf AlSayied Ann Bot Author Version

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About Pat Heslop-Harrison

Professor of Molecular Cytogenetics and Cell Biology, University of Leicester Chief Editor, Annals of Botany. Research: genome evolution, breeding and biodiversity in agricultural species; the impact of agriculture; evalutation of research and advanced training.
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2 Responses to Diversity and relationships of Crocus sativus and its relatives analysed by IRAPs

  1. Pingback: Nouf Alsayied: PhD student with Saffron Crocus at the University of Leicester and faculty member Umm Al-Qura University, Kingdom of Saudi Arabia | Molecular cytogenetics and genome evolution

  2. Pingback: Saffron Crocus, quality and fraud in New York Times | Molecular cytogenetics and genome evolution

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