Tag Archives: transposons

Repetitive DNA in the catfish genome- rDNA, microsatellites, and Tc1-mariner transposon sequences in Imparfinis

339. Gouveia JG, Wolf IR, Vilas-Boas LA, Heslop-Harrison JS, Schwarzacher T, Dias AL. 2017. Repetitive DNA in the catfish genome: rDNA, microsatellites, and Tc1-mariner transposon sequences in Imparfinis species (Siluriformes, Heptapteridae). Journal of Heredity 108(6): 650-657. Journal link: https://doi.org/10.1093/jhered/esx065 Author PHHGouveia_CatfishRepeatsAuthorVersion Physical mapping of repetitive … Continue reading

Posted in animals, Collaborators, Publications, Species | Tagged , , , , , , , , , , , , , , | Leave a comment

Polyploidy and interspecific hybridisation: partners for adaptation, speciation and evolution in plants

337. Alix K, Gérard PR, Schwarzacher T, Heslop-Harrison JS. 2017. Polyploidy and interspecific hybridisation: partners for adaptation, speciation and evolution in plants. Annals of Botany 120(2): 183-194. https://doi.org/10.1093/aob/mcx079  (Free access). Polyploidy, defined as whole genome duplication, is present in almost all lineages … Continue reading

Posted in Brassica, cereals, Publications, wheat | Tagged , , , , , , , , , , , | Leave a comment

Analysis of Petunia vein clearing virus (PVCV) sequences, retroelements and tandem repeats in Petunia axillaris N and P. inflata S6

325a. Schwarzacher T, Heslop-Harrison JS, Richert-Pöggeler KR. 2016. Analysis of Petunia vein clearing virus (PVCV) sequences, retroelements and tandem repeats in Petunia axillaris N and P. inflata S6. Supplementary manuscript 2. Nature Plants 2: article number 16074. Link to manuscript: Petunia_PVCV_Repeats_SchwarzacherEtAl2016 Within … Continue reading

Posted in Publications, Species | Tagged , , , , , , , , , , , , , , , , , | Leave a comment

Repetitive DNA in eukaryotic genomes

322. Biscotti MA, Olmo E, Heslop-Harrison JS. 2015. Repetitive DNA in eukaryotic genomes. Chromosome Research 23(3): 415-420. DOI: 10.1007/s10577-015-9499-z Biscotti Repetitive DNA Author Version Link to Repetitive DNA summary Diagram Molcyt.com DNA Repetitive DNA — sequence motifs repeated hundreds or thousands of … Continue reading

Posted in Publications | Tagged , , , , , , , , , , | Leave a comment

Chromosomal distribution and evolution of retrotransposons in diploid and polyploid Brachiaria forage grasses

319. Santos FC, Guyot R, Valle CB do, Chiari L, Techio VH, Heslop-Harrison P, Vanzela ALL. 2015. Chromosomal distribution and evolution of abundant retrotransposons in plants: gypsy elements in diploid and polyploid Brachiaria forage grasses. Chromosome Research 23(3): 571-582. DOI: 10.1007/s10577-015-9492-6 Text … Continue reading

Posted in cereals, Farming, Publications, Species, Techniques | Tagged , , , , , , , , , , , , , , , , , , , | Leave a comment

Molecular characterization and diversity of a novel nonautonomous Mutator-like transposon family in Brassica

320. Nouroz F, Noreen S, Heslop-Harrison JS. 2015. Molecular characterization and diversity of a novel nonautonomous Mutator-like transposon family in Brassica. Pakistani Journal of Botany 47(4): 1367-1375. Publisher abstract Publisher free full text. Local copy BrassicaMutator_Nouroz_PakistaniJBot2015 Transposable elements (TEs) are capable of … Continue reading

Posted in Brassica, Publications | Tagged , , , , , , , , , , , , , , , | Leave a comment

Evolutionary genomics of miniature inverted-repeat transposable elements (MITEs) in Brassica

317. Nouroz F, Noreen S, Heslop-Harrison JS. 2015. Evolutionary genomics of miniature inverted-repeat transposable elements (MITEs) in Brassica. Molecular Genetics and Genomics (MGG) 290 (6): 2297–2312. DOI: 10.1007/s00438-015-1076-9 Brassica MITEs Author Version MGG download Miniature inverted-repeat transposable elements (MITEs) are truncated derivatives of autonomous DNA transposons, … Continue reading

Posted in Publications | Tagged , , , , , , , , , , , , , , , , , , , , , , , | Leave a comment

Diversity and characters in Ethiopian linseed Linum #PAGXXIII Negash Worku

Many people have talked about Orphan crops – those where there has been little genetic or other research – and the characterization, evaluation and exploitation of germplasm at the #PAGXXIII Plant and Animal Genome Conference this week. Today, I am … Continue reading

Posted in Conferences, cytogenetics, Environment, Farming, News, Research | Tagged , , , , , , , , , , , , , , , , , , , | 1 Comment

Transposable Elements in the Musa and Banana Genome: PAGXXIII conference talk

There has been a lot of talk about transposable elements during the Plant and Animal Genome #PAGXXIII meeting this week. As half or more – often 75% – of all the DNA in a plant or animal genome is typically … Continue reading

Posted in chromosomes, Conferences, cytogenetics, Farming, Musa, Research, Species | Tagged , , , , , , , , , , , | 2 Comments

The diversification and activity of hAT transposons in Musa genomes

Menzel G, Heitkam T, Seibt KM, Nouroz F, Müller-Stoerme M, Heslop-Harrison JS, Schmidt T. 2014. The diversification and activity of hAT transposons in Musa genomes. Chromosome Research 22: 559–571. DOI 10.1007/s10577-014-9445-5 and Pubmed link ID: 25377178 And author print hATs in Musa … Continue reading

Posted in Musa, Publications, Species | Tagged , , , , , , , , , , , , , , , | Leave a comment

Faisal Nouroz : Collaborator from Hazara University, Pakistan on genome organization

Dr Faisal Nouroz completed his PhD at the University of Leicester in 2012, working on mobile element evolution in two contrasting crop groups, Musa and Brassica. Dr. Faisal Nouroz held a Ph.D scholarship from the Higher Education Commission and Hazara … Continue reading

Posted in Collaborators | Tagged , , , , , , , , , , , , , | 1 Comment

Repetitive DNA in the edible button mushroom

I have a mental picture of the structure of a typical plant genome and typical animal genome, with their  transposons (DNA and RNA), tandemly-repeated satellite sequences, minisatellites, microsatellites and other repeats. From this paper, I have a view of repeats in the second … Continue reading

Posted in Genomics, Literature | Tagged , , , , , , , | Leave a comment

The genome sequence of banana

300. D’Hont A, Denoeud F, Aury JM, Baurens FC, Carreel F, Garsmeur O, Noel B, Bocs S, Droc G, Rouard M, Da Silva C, Jabbari K, Cardi C, Poulain J, Souquet M, Labadie K, Jourda C, Lengellé J, Rodier-Goud M, … Continue reading

Posted in Publications | Tagged , , , , , , , , , | 1 Comment