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Recent Posts
- Conservation, divergence and functions of centromeric satellite DNA families in the Bovidae
- Bovine satellite DNAs and a history of the evolution of complexity and its impact in the Bovidae family
- Enset in Ethiopia as a poorly characterized but resilient starch staple: review article
- Perspectives on research with varietal diversity and sustainable utilization in enset (Ensete banana)
- Postdoctoral PDA RA positions in South China Botanical Gardens Plant Genome Evolution Research Group
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Categories
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Molecular cytogenetics, plant nuclear genome organization, in situ hybridization, genomics and evolution of crops and other species
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Tag Archives: transposons
Repetitive DNA in the catfish genome- rDNA, microsatellites, and Tc1-mariner transposon sequences in Imparfinis
339. Gouveia JG, Wolf IR, Vilas-Boas LA, Heslop-Harrison JS, Schwarzacher T, Dias AL. 2017. Repetitive DNA in the catfish genome: rDNA, microsatellites, and Tc1-mariner transposon sequences in Imparfinis species (Siluriformes, Heptapteridae). Journal of Heredity 108(6): 650-657. Journal link: https://doi.org/10.1093/jhered/esx065 Author PHHGouveia_CatfishRepeatsAuthorVersion Physical mapping of repetitive … Continue reading
Polyploidy and interspecific hybridisation: partners for adaptation, speciation and evolution in plants
337. Alix K, Gérard PR, Schwarzacher T, Heslop-Harrison JS. 2017. Polyploidy and interspecific hybridisation: partners for adaptation, speciation and evolution in plants. Annals of Botany 120(2): 183-194. https://doi.org/10.1093/aob/mcx079 (Free access). Polyploidy, defined as whole genome duplication, is present in almost all lineages … Continue reading
Posted in Brassica, cereals, Publications, wheat
Tagged breeding, chromosomes, ecology, evolution, genome evolution, genomics, hybrids, polyploidy, selection, TEs, transposons, wheat
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Analysis of Petunia vein clearing virus (PVCV) sequences, retroelements and tandem repeats in Petunia axillaris N and P. inflata S6
325a. Schwarzacher T, Heslop-Harrison JS, Richert-Pöggeler KR. 2016. Analysis of Petunia vein clearing virus (PVCV) sequences, retroelements and tandem repeats in Petunia axillaris N and P. inflata S6. Supplementary manuscript 2. Nature Plants 2: article number 16074. Link to manuscript: Petunia_PVCV_Repeats_SchwarzacherEtAl2016 Within … Continue reading
Repetitive DNA in eukaryotic genomes
322. Biscotti MA, Olmo E, Heslop-Harrison JS. 2015. Repetitive DNA in eukaryotic genomes. Chromosome Research 23(3): 415-420. DOI: 10.1007/s10577-015-9499-z Biscotti Repetitive DNA Author Version Link to Repetitive DNA summary Diagram Molcyt.com DNA Repetitive DNA — sequence motifs repeated hundreds or thousands of … Continue reading
Molecular characterization and diversity of a novel nonautonomous Mutator-like transposon family in Brassica
320. Nouroz F, Noreen S, Heslop-Harrison JS. 2015. Molecular characterization and diversity of a novel nonautonomous Mutator-like transposon family in Brassica. Pakistani Journal of Botany 47(4): 1367-1375. Publisher abstract Publisher free full text. Local copy BrassicaMutator_Nouroz_PakistaniJBot2015 Transposable elements (TEs) are capable of … Continue reading
Posted in Brassica, Publications
Tagged brassica, cabbage, diversity, inverted repeats, MULE, Mutator, mutator-like, pakistan, Phylogenetic analysis, phylogeny, target site duplications, TEs, TIR, transposable elements, transposons, TSD
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Evolutionary genomics of miniature inverted-repeat transposable elements (MITEs) in Brassica
317. Nouroz F, Noreen S, Heslop-Harrison JS. 2015. Evolutionary genomics of miniature inverted-repeat transposable elements (MITEs) in Brassica. Molecular Genetics and Genomics (MGG) 290 (6): 2297–2312. DOI: 10.1007/s00438-015-1076-9 Brassica MITEs Author Version MGG download Miniature inverted-repeat transposable elements (MITEs) are truncated derivatives of autonomous DNA transposons, … Continue reading
Posted in Publications
Tagged bac, BACs, biodiversity, bioinformatics, brassica, breeding, cabbage, chromosomes, DNA, dot-plots, dotplots, genome, genome evolution, genomics, hybrids, LTRs, MITEs, rape, rapeseed, repetitive DNA, retrotransposons, Southern hybridization, TIRs, transposons
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Diversity and characters in Ethiopian linseed Linum #PAGXXIII Negash Worku
Many people have talked about Orphan crops – those where there has been little genetic or other research – and the characterization, evaluation and exploitation of germplasm at the #PAGXXIII Plant and Animal Genome Conference this week. Today, I am … Continue reading
Posted in Conferences, cytogenetics, Environment, Farming, News, Research
Tagged Africa, biodiversity, botany, breeding, domestication, Ethiopia, farming, flax, genetics, genomics, IRAP, IRAPs, linseed, Linum, markers, molecular diversity, plants, retrotransposons, seeds, transposons
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Transposable Elements in the Musa and Banana Genome: PAGXXIII conference talk
There has been a lot of talk about transposable elements during the Plant and Animal Genome #PAGXXIII meeting this week. As half or more – often 75% – of all the DNA in a plant or animal genome is typically … Continue reading
Posted in chromosomes, Conferences, cytogenetics, Farming, Musa, Research, Species
Tagged banana, breeding, chromosomes, DNA, genome evolution, genomics, hat, hat elements, musa, PAGxxiii, retrotransposons, transposons
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The diversification and activity of hAT transposons in Musa genomes
Menzel G, Heitkam T, Seibt KM, Nouroz F, Müller-Stoerme M, Heslop-Harrison JS, Schmidt T. 2014. The diversification and activity of hAT transposons in Musa genomes. Chromosome Research 22: 559–571. DOI 10.1007/s10577-014-9445-5 and Pubmed link ID: 25377178 And author print hATs in Musa … Continue reading
Posted in Musa, Publications, Species
Tagged banana, DNA transposons, evolution, genome evolution, genomics, hat, hat elements, heslop harrison, MITEs, musa, NGS, retroelements, retrotransposons, schmidt, TIR, transposons
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Faisal Nouroz : Collaborator from Hazara University, Pakistan on genome organization
Dr Faisal Nouroz completed his PhD at the University of Leicester in 2012, working on mobile element evolution in two contrasting crop groups, Musa and Brassica. Dr. Faisal Nouroz held a Ph.D scholarship from the Higher Education Commission and Hazara … Continue reading
Posted in Collaborators
Tagged banana, brassica, crops, evolution, genome, hazara, mobile DNA, musa, pakistan, PhD, retrotransposons, students, te, transposons
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Repetitive DNA in the edible button mushroom
I have a mental picture of the structure of a typical plant genome and typical animal genome, with their transposons (DNA and RNA), tandemly-repeated satellite sequences, minisatellites, microsatellites and other repeats. From this paper, I have a view of repeats in the second … Continue reading
Posted in Genomics, Literature
Tagged evolution, fungi, genome organization, genomics, mushrooms, repetitive DNA, satellite DNA, transposons
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The genome sequence of banana
300. D’Hont A, Denoeud F, Aury JM, Baurens FC, Carreel F, Garsmeur O, Noel B, Bocs S, Droc G, Rouard M, Da Silva C, Jabbari K, Cardi C, Poulain J, Souquet M, Labadie K, Jourda C, Lengellé J, Rodier-Goud M, … Continue reading
Posted in Publications
Tagged banana, comparative genomics, DNA, genes, genome, genomics, musa, retrotransposons, sequences, transposons
1 Comment
