Publication list from Molecular Cytogenetics and Plant Genome Evolution Groups

J.S. Pat Heslop-Harrison, Trude Schwarzacher et al. (first names/keywords added after references to help searching) – see for earlier

  • TS. Desjardins SD, Bailey JP, Zhang B, Zhao K, Schwarzacher T. 2023. New insights into the phylogenetic relationships of Japanese knotweed (Reynoutria japonica) and allied taxa in subtribe Reynoutriinae (Polygonaceae). PhytoKeys 220: 83-108. .
  • 395. Wang Z-F, Rouard M, Droc G, Heslop-Harrison JS, Ge X-J. 2023. Genome assembly of Musa beccarii shows extensive chromosomal rearrangements and genome expansion during evolution of Musaceae genomes. Gigascience 12: 1-20.
  • 394. Liu Q, Yuan H, Xu J, Cui D, Xiong G, Schwarzacher T, Heslop-Harrison JS. 2023. The multichromosomal organization of the mitochondrial genome of the diploid oat Avena longiglumisSubject to revisons.
  • 393. Gori GB, Aschner M, Borgert CJ, Cohen S, Dietrich DR, Galli CL, Greim H, Heslop-Harrison JS, Kacew S, Kaminski NE, Klaunig JE, Marquardt HWJ, Moretto A, Pelkonen O, Roberts R, Savolainen KM, Tsatsakis A, Yamazaki H. 2023. US regulations to curb alleged cancer causes are ineffectual and compromised by scientific, constitutional and ethical violations. Archives of Toxicology in press.
  • 392. Dwivedi SW, Heslop-Harrison JS, Spillane C, McKeown PC, Edwards D, Goldman I, Ortiz R. 2023. Evolutionary dynamics and adaptive benefits of deleterious mutations in crop genepools. Trends in Plant Science In press, Jan 2023.
  • 391. Schwarzacher T, Liu Q, Heslop-Harrison, JS. 2023. Plant cytogenetics: from chromosomes to cytogenomics, in: Tony Heitkam and Sònia Garcia (eds) Plant Cytogenetics: Methods and Protocols Methods in Molecular Biology MIMB. Humana Press, New York. In press.
  • 390. Li L, Schwarzacher T, Tomaszewska P, Liu Q, Li X, Yi K, Wu W, Heslop-Harrison JS. 2023. Protocols for chromosome preparations: molecular cytogenetics and studying genome organization in coffee. In: ILW Ingelbrecht, M do Céu Lavado da Silva and J Jankowicz-Cieslak (eds) Mutation Breeding in Coffee with Special Reference to Coffee Leaf Rust. Springer Nature, Cham, Switzerland. In press.
  • 389. Liu Q, Schwarzacher T, Heslop-Harrison JS. 2023. Polyploidy: its consequences and enabling role in plant diversification and evolution. Annals of Botany 131: 1-10.
  • 388. Tomaszewska P, Schwarzacher T, Heslop-Harrison JS. 2022. Oat chromosome and genome evolution defined by widespread terminal intergenomic translocations in polyploids. Frontiers in Plant Science 13:1026364.
  • 387. Droc G, Martin G, Guignon V, Summo M, Sempéré G, Durant E, Soriano A, Baurens F-C, Cenci A, Breton C, Shah T, Aury J-M, Ge X-J, Heslop Harrison P, Yahiaoui N, D’Hont A, Rouard M. 2022. The Banana Genome Hub: a community database for genomics in the Musaceae. Horticulture Research 9: uhac221.
  • 386. Rathore P, Schwarzacher T, Heslop-Harrison JP, Bhat V, Tomaszewska P. 2022. The repetitive DNA sequence landscape and DNA methylation in chromosomes of an apomictic tropical forage grass, Cenchrus ciliarisFrontiers in Plant Science 13: 952968.
  • 385. Biswas MK, Schwarzacher T, Heslop-Harrison JS. 2022. Large scale genome analysis: genome sequences, chromosomal reorganization, and repetitive DNA in Brassica juncea and relatives. In The Brassica juncea Genome eds Chittaranjan Kole, Trilochan Mohapatra. pp. 269-281. Springer.
  • 384. Biswas MK, Schwarzacher T, Heslop-Harrison JS. 2022. Large scale genome analysis: genome sequences, chromosomal reorganization, and repetitive DNA in Brassica juncea and relatives. In The Brassica juncea Genome eds Chittaranjan Kole, Trilochan Mohapatra. pp. 269-281. Springer.
  • 383. Mustafa SI, Heslop-Harrison JS, Schwarzacher T. 2022. The complete mitochondrial genome from Iraqi Meriz goats and the maternal lineage using whole genome sequencing data. Iranian Journal of Applied Animal Science Jun 1;12(2):321-8.
  • 382. White O, Biswas M, Abebe WM, Dussert Y, Kebede F, Nichols R, Buggs RJ, Demissew S, Woldeyes F, Papadopulos AS, Schwarzacher T, Heslop-Harrison JS, Wilkin P, Borrell JS. 2022. Maintenance and expansion of genetic and trait variation following domestication in a clonal crop. EcoEvoRxiv …
  • 381. Taheri S, Teo CH, Heslop-Harrison JS, Schwarzacher T, Tan YS, Wee WY, Khalid N, Biswas MK, Mutha NV, Mohd-Yusuf Y, Gan HM. 2022. Genome assembly and analysis of the flavonoid and phenylpropanoid biosynthetic pathways in Fingerroot ginger (Boesenbergia rotunda). International Journal of Molecular Sciences Jan;23(13):7269.
  • 380. Zhang F, Chen F, Schwarzacher T, Heslop-Harrison JS, Teng N. 2022. The nature and genomic landscape of repetitive DNA classes in Chrysanthemum nankingense shows recent genomic changes. Annals of Botany 131(1)215–228.
  • 379. Wang Z, Rouard M, Biswas MK, Droc G, Cui D, Roux N, Baurens FC, Ge XJ, Schwarzacher T, Heslop-Harrison JS, Liu Q. 2022. A chromosome-level reference genome of Ensete glaucum gives insight into diversity, chromosomal and repetitive sequence evolution in the Musaceae. Gigascience 11: 1-21.
  • 378. Ran Li, Mian Gong, Xinmiao Zhang, Fei Wang, Zhenyu Liu, Lei Zhang, Mengsi Xu, Yunfeng Zhang, Xuelei Dai, Zhuangbiao Zhang, Wenwen Fang, Yuta Yang, Huanhuan Zhang, Weiwei Fu, Chunna Cao, Peng Yang, Zeinab Amiri Ghanatsaman, Niloufar Jafarpour Negari, Hojjat Asadollahpour Nanaei, Xiangpeng Yue, Yuxuan Song, Xianyong Lan, Weidong Deng, Xihong Wang, Ruidong Xiang, Eveline M. Ibeagha-Awemu, Pat (J.S.) Heslop-Harrison, Johannes A. Lenstra, Shangquan Gan, Yu Jiang. 2021. The first sheep graph-based pan-genome reveals the spectrum of structural variations and their effects on tail phenotypes. bioRxiv 2021.12.22.472709; doi:
  • 377. Zhou S, Richert-Pöggeler KR, Wang Z, Schwarzacher T, Heslop-Harrison JS, Liu Q. 2022. High throughput RNA sequencing discovers symptomatic and latent viruses: an example from ornamental Hibiscus.  bioRxiv 2022.01.25.477650; doi:
  • 376. Liu Q, Yuan HY, Li MZ, Wang ZW, Cui DL, Ye Y, Sun Z, Tan X, Schwarzacher T, Heslop-Harrison JS. 2022. Chromosome-scale genome assembly of the diploid oat Avena longiglumis reveals the landscape of repetitive sequences, genes and chromosome evolution in grasses  bioRxiv 2022.02.09.479819; doi:
  • 375. Mustafa SI, Schwarzacher T, Heslop-Harrison JS. 2022. The nature and chromosomal landscape of endogenous retroviruses (ERVs) integrated in the sheep nuclear genome. DNA 2(1): 86-103. doi:
  • 374. Tomaszewska P, Vorontsova MS, Renvoize SA, Ficinski SZ, Tohme J, Schwarzacher T, Castiblanco V, de Vega JJ, Mitchell RA, Heslop-Harrison P. 2022. Complex polyploid and hybrid species in an apomictic and sexual tropical forage grass group: genomic composition and evolution in Urochloa (Brachiaria). Annals of Botany 131(1).: 87–108. doi:10.1093/aob/mcab147
  • 373. Higgins J, Tomaszewska P, Pellny TK, Castiblanco V, Arango J, Tohme J, Schwarzacher T, Mitchell RA, Heslop-Harrison JS, De Vega JJ. 2022. Diverged subpopulations in tropical Urochloa (Brachiaria) forage species indicate a role for facultative apomixis and varying ploidy in their population structure and evolution. Annals of Botany 130: 657-669. doi:
  • 372. Hanley SJ, Pellny TK, de Vega JJ, Castiblanco V, Arango J, Eastmond PJ, Heslop-Harrison JSP, Mitchell RAC. 2021. Allele mining in diverse accessions of tropical grasses to improve forage quality and reduce environmental impact. Annals of Botany 128: 627-637. doi:10.1093/aob/mcab101
  • 371. Richert-Pöggeler KR, Vijverberg K, Alisawi O, Chofong GN, Heslop-Harrison JSP, Schwarzacher T. 2021. Participation of multifunctional RNA in replication, recombination and regulation of Endogenous Plant PararetroViruses (EPRVs). Frontiers in Plant Science Jun 21;12: 689307. doi:10.3389/fpls.2021.689307
  • 370. Barile FA, Berry SC, Blaauboer B, Boobis A, Bolt HM, Borgert C, Dekant W, Dietrich D, Domingo JL, Galli CL, Gori GB, Hengstler JG, Heslop-Harrison P, Kacew S, Marquardt H, Mally A, Pelkonen O, Savolainen K, Testai E, Tsatsakis A, Vermeulen NP. 2021. The EU chemicals strategy for sustainability: in support of the BfR position. Archives of Toxicology Sep;95(9):3133-6. doi:10.1007/s00204-021-03125-w
  • 369. Barile FA, Berry SC, Blaauboer B, Boobis A, Bolt HM, Borgert C, Dekant W, Dietrich D, Domingo JL, Galli CL, Gori GB, Hengstler JG, Kacew S, Marquardt H, Pelkonen O, Savolainen K, Heslop-Harrison JS, Tsatsakis A, Vermeulen NP. 2021. Critique of the “Comment” entitled “Pyrethroid exposure: Not so harmless after all” by Demeneix et al. (2020) published in the Lancet Diabetes Endocrinology. Toxicology Letters Apr 1;340:1-3. doi:10.1016/j.toxlet.2020.12.020
  • 368. Tomaszewska P, Pellny TK, Hernández LM, Mitchell RAC, Castiblanco V, de Vega JJ, Schwarzacher T, Heslop-Harrison JS. 2021. Flow cytometry-based determination of ploidy from dried leaf specimens in genomically complex collections of the tropical forage grass Urochloa s.l. Genes Jun 23;12(7):957. doi:10.3390/genes12070957
  • 367. Campos ML, Rocha-Reis DA, Heslop-Harrison JS, Schwarzacher T, Kavalco KF. 2021. Ten complete mitochondrial genomes of Gymnocharacini (Stethaprioninae, Characiformes): evolutionary relationships and a repetitive element in the Control Region (D-loop) Frontiers in Ecology and Evolution 22 July 2021. doi:10.3389/fevo.2021.650783
  • 366. Agrawal N, Gupta M, Atri C, Akhatar J, Kumar S, Heslop-Harrison JS, Banga SS. 2021. Anchoring alien chromosome segment substitutions bearing gene(s) for resistance to mustard aphid in Brassica juncea-B. fruticulosa introgression lines and their possible disruption through gamma irradiation. Theoretical and Applied Genetics 134(10):3209-3224. doi:10.1007/s00122-021-03886-z
  • 365.Gao JG, Heslop-Harrison P, Liu PL, Zhang RG. 2021. Panicum virgatum (Poaceae). Trends in Genetics Aug;37(8):771-772. doi:10.1016/j.tig.2021.04.009
  • 364. Resende SV, Pasa R, Menegídio FB, Heslop-Harrison JS, Schwarzacher T, Kavalco KF. 2020. Complete mitochondrial genome of the endangered species Brycon nattereri (Characiformes, Characidae). F1000 Research 2020, 9:1343. doi: 10.12688/f1000research.26524.1
  • 363. Agrawal N, Gupta M, Banga SS, Heslop-Harrison JS. 2021. Identification of chromosomes and chromosome rearrangements in crop Brassicas and Raphanus sativus: a cytogenetic toolkit using synthesized massive oligonucleotide libraries. Frontiers in Plant Science Dec 23;11: 598039. doi:10.3389/fpls.2020.598039
  • 362. Escudeiro A, Adega F, Robinson TJ, Heslop-Harrison JS, Chaves R. 2021. Analysis of the Robertsonian (1;29) fusion in Bovinae reveals a common mechanism: insights into its clinical occurrence and chromosomal evolution. Chromosome Research 29, 301–312 . doi:10.1007/s10577-021-09667-0
  • 361.Zaki NM, Schwarzacher T, Singh R, Madon M, Wischmeyer C, Hanim Mohd Nor N, Zulkifli MA, Heslop-Harrison JSP. 2021. Chromosome identification in oil palm (Elaeis guineensis) using in situ hybridization with massive pools of single copy oligonucleotides and transferability across Arecaceae species. Chromosome Research 2021 Oct 16. Online ahead of print. PMID: 34657216. doi: 10.1007/s10577-021-09675-0
  • 360. Rocha-Reis DA, Pasa R, Menegidio FB, Heslop-Harrison JS, Schwarzacher T, Kavalco KF. 2020. The complete mitochondrial genome of two armored catfish populations of the genus Hypostomus (Siluriformes, Loricariidae, Hypostominae. Frontiers in Ecology and Evolution 04 December 2020. . doi: 10.3389/fevo.2020.579965
  • 359. Nuraga GW, Feyissa T, Tesfaye K, Biswas MK, Schwarzacher T, Borrell JS, Wilkin P, Demissew S, Tadele Z, Heslop-Harrison JS. 2020. The genotypic and genetic diversity of enset (Ensete ventricosum) landraces used in traditional medicine is similar to the diversity found in starchy landraces. Frontiers in Plant Science 12, p. 756182. doi: 10.3389/fpls.2021.756182 .
  • 358. Yemataw Z, Borrell JS, Biswas MK, White O, Mengesha W, Muzemil S, Jaypal N. Darbar JN, Ondo I, Heslop Harrison JS, Blomme G, Wilkin P. 2020. The distribution of enset pests and pathogens and a genomic survey of enset Xanthomonas wilt. bioRXiv doi: 10.1101/2020.06.18.144261 Posted 18 June, 2020.
  • 357. Biswas MK, Darbar JN, Borrell JS, Bagchi M, Biswas D, Nuraga GW, Demissew S, Wilkin P, Schwarzacher T, Heslop-Harrison JS. 2020. The landscape of microsatellites in the enset (Ensete ventricosum) genome and web-based marker resource development. Scientific Reports Sep 17;10(1): 15312. doi: 10.1038/s41598-020-71984-x
  • 356. Liu Q, Li X, Li M, Xu W, Schwarzacher T, Heslop-Harrison JS. 2020. Comparative chloroplast genome analyses of Avena: insights into evolutionary dynamics and phylogeny. BMC Plant Biology 20: 406. doi: 10.1186/s12870-020-02621-y
  • 355. Tamrat S, Borrell JS, Biswas MK, Gashu D, Wondimu T, Vásquez-Londoño CA, Heslop-Harrison JS, Demissew S, Wilkin P, Howes M-JR. 2020. Micronutrient composition and microbial community analysis across diverse landraces of the Ethiopian orphan crop enset. Food Research International 2020: 109636. doi: 10.1016/j.foodres.2020.109636
  • TS. Sepsi A, Schwarzacher T. 2020. Chromosome-nuclear envelope tethering – a process that orchestrates homologue pairing during plant meiosis? Journal of Cell Science 133(15): doi: 10.1242/jcs.243667
  • 354. Autrup H, Barile FA, Berry C, Blaauboer BJ, Boobis A, Bolt H, Borgert CJ, Dekant W, Dietrich D, Domingo JL, Gori GB, Greim H, Hengstler J, Kacew S, Marquardt H, Pelkonen O, Savolainen K, Heslop-Harrison P, Vermeulen NP. 2020. Human exposure to synthetic endocrine disrupting chemicals (S-EDCs) is generally negligible as compared to natural compounds with higher or comparable endocrine activity. How to evaluate the risk of the S-EDCs? Computational Toxicology 14: 100124. doi:10.1016/j.comtox.2020.100124. ALSO published as “Guest Editorial” Archives of ToxicologyArchiv für Toxikologie 94(7): 2549-2557. doi: 10.1007/s00204-020-02800-8 AND J Toxicol Environ Health A. 2020 Jul 17;83(13-14):485-494. doi: 10.1080/15287394.2020.1756592. Epub 2020 Jun 18 AND Chem Biol Interact. 2020 Aug 1;326:109099. doi: 10.1016/j.cbi.2020.109099. Epub 2020 May 1. PMID: 32370863 AND Toxicol Lett. 2020 Oct 1;331:259-264. doi: 10.1016/j.toxlet.2020.04.008. Epub 2020 Apr 30 AND Toxicol In Vitro. 2020 Sep;67:104861. doi: 10.1016/j.tiv.2020.104861. Epub 2020 Apr 30.
  • 353. Heslop-Harrison P. 2019. Book review: Tropical Plant Collections: Legacies from the Past? Essential Tools for the Future? Scientia Danica. Series B, Biologica eds Ib Friis and Henrik Balslev. 2017. 306 pp. ISBN 978-87-7304-407-0.Annals of Botany 123(6): vii-viii (freely accessible). doi: 10.1093/aob/mcz049
  • 352. Liu Q, Li X, Zhou X, Li M, Zhang F, Schwarzacher T, Heslop-Harrison JS. 2019. The repetitive DNA landscape in Avena (Poaceae): chromosome and genome evolution defined by major repeat classes in whole-genome sequence reads. BMC Plant Biology Dec;19(1):226. pp 1-17 doi:10.1186/s12870-019-1769-z
  • 351. Heslop-Harrison P. 2019. Editorial: Introducing Commentaries to Annals of Botany. Annals of Botany 124(2): iv–v (freely accessible). doi:10.1093/aob/mcz090
  • 350. Escudeiro A, Adega F, Robinson TJ, Heslop-Harrison JS, Chaves R. 2019. Conservation, divergence and functions of centromeric satellite DNA families in the Bovidae. Genome Biology and Evolution 11(4): 1152-1165 (open access). 
  • 349. Borrell JS, Biswas MK, Goodwin M, Blomme G, Schwarzacher T, Heslop-Harrison JS, Wendawek AM, Berhanu A, Kallow S, Janssens S, Molla EL, Davis AP, Woldeyes F, Willis K, Demissew S, Wilkin P. 2019. Enset in Ethiopia: a poorly characterized but resilient starch staple. Annals of Botany 123(5): 747-766 (freely accessible).
  • 348. Escudeiro A, Ferreira D, Mendes-da-Silva A, Heslop-Harrison JS, Adega F, Chaves R. 2019. Bovine satellite DNAs–a history of the evolution of complexity and its impact in the Bovidae family. European Zoological Journal 86(1): 20-37 (open access).
  • 347. Wilkin P, Davis A, Demissew S, Etherington T, Goodwin M, Heslop-Harrison P, Schwarzacher T, Willis K. 2018. A perspective to enhance innovative research with emphasis on varietal diversity and sustainable utilization of enset (Ensete ventricosum). Ethiopian Journal of Biological Sciences 17(Suppl.): 201–209.
  • 346. Nielen S, Forster BP, Heslop-Harrison JS. 2018. Mutagen effects in the first generation after seed treatment: biological effects of mutation treatments. Chapter 4 In: FAO/IAEA. Manual on Mutation Breeding – Third edition. Spencer-Lopes MM, Forster BP, Jankuloski L (eds), Food and Agriculture Organization of the United Nations. Rome, Italy. 301 pp. Free download of whole book:
  • 345. Baudouin L, Heslop-Harrison P, Pereira MG. 2018. 3.9.2 Preparing the era of marker-assisted breeding – Chapter 3. Where we need to be to secure diversity and promote use. In Bourdeix R & Prades A (Eds.), A Global Strategy for the Conservation and Use of Coconut Genetic Resources 2018-2028. pp 169-171. Montpellier, France. Bioversity International. ISBN 13:978-92-9043-984-4 Download from Bioversity Website.
  • 344. Sepsi A, Fábián A, Jäger K, Heslop-Harrison JS, Schwarzacher T. 2018. ImmunoFISH: simultaneous visualisation of proteins and DNA sequences gives insight into meiotic processes in nuclei of grasses. Frontiers in Plant Science 9: article 1193.
  • 343. Velmurugan J, Milbourne D, Connolly V, Heslop-Harrison JS, Anhalt UC, Lynch MB, Barth S. 2018. An immortalized genetic mapping population for perennial ryegrass: a resource for phenotyping and complex trait mapping. Frontiers in Plant Science 9: article 717.
  • 342. Mhiret WN, Heslop-Harrison JS. 2018. Biodiversity in Ethiopian linseed (Linum usitatissimum L.): molecular characterization of landraces and some wild species. Genetic Resources and Crop Evolution 65: 1603-1614. and author version

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